Dyer, B.D., Kahn, M.J., and LeBlanc, M.D. (2007).
Classification and Regression Tree (CART) analyses of genomic signatures reveal
sets of tetramers that discriminate temperature optima of Archaea and Bacteria.
Archaea 2:159-167.
LeBlanc, M.D. and Dyer, B.D. (2004).
Bioinformatics and Computing Curricula 2001 --
Why Computer Science is well positioned
in a post-genomic world. ACM SIGCSE Bulletin, v36(4), Dec. 2004.
Dyer, B.D., LeBlanc, M.D., Benz, S., Cahalan, P., Donorfio, B., Sagui, P.,
Villa, A., and Williams, G. (2004).
A DNA motif lexicon: cataloguing and annotating sequences.
In Silico Biology, v4, 0039.
http://www.bioinfo.de/isb/2004/04/0039/
Benz, Steve and Cool, Jonah (2003). Using Regular Expressions to Locate
Putative Zinc Finger Binding Sites. Abstract appears in The Journal of
Computing Sciences in Colleges, v18(4).
http://portal.acm.org/citation.cfm?id=771881&coll=GUIDE&dl=GUIDE&CFID=31524227&CFTOKEN=36456405
Benz, S. '05, Grossman, R. '07, Dyer, B. and LeBlanc, M. (2004). Genomics Research and the Liberal Arts: Building a Database for Exploring Your Favorite Set of Genes (favGene v2.0). Transformations-Liberal Arts in the Digital Age, v2(1), May 2004. http://www.colleges.org/transformations/index.php?q=node/view/80
Benz, Steve '05 and Grossman, Robby '07 (2004). FavGene 2.0 -- A Perl and MySQL System for Exploring a Set of Genes . Journal of Computing Sciences in Colleges. v19(5), 311-312.
Benz, Steve and Cool, Jonah (2003). Using Regular Expressions to Locate Putative Zinc Finger Binding Sites. Abstract appears in The Journal of Computing Sciences in Colleges , v18(4).
LeBlanc, M. and Dyer, B. (2003). Teaching Together: A three-year case study in genomics. The Journal of Computing in Colleges.v18(5), 85-95. http://portal.acm.org/citation.cfm?id=771832.771848
Villa, Adam (2003). Giving DNA a Trie. Abstract appears in The Journal of Computing Sciences in Colleges , v18(4).
Dyer, B. and M. LeBlanc (2002). A DNA Motif Lexicon. The Scientist. August 19, 2002.
Dyer, B. and M. LeBlanc (2002). Meeting Report: Incorporating Genomics Research into Undergraduate Curricula. Cell Biology Education , v1(4), Winter Issue 2002, 101-104.
Christoforou, Andrea (2001). Counting Problems in Genomics. Abstract appears in Journal of Computing in Small Colleges, v16(4):343. Andrea won a 2001 Great Britain Fulbright scholarship and has completed her M.S. in Genomics in Scotland.
Kimball, Melissa (2001). A Motif Lexicon for the Genomic Analysis of DNA. Abstract appears in Journal of Computing in Small Colleges, v16(4):344. Melissa is in graduate school in Mathematics at UNH.
LeBlanc, M., G. Aspeslagh, N. Buggia, B. Dyer (2000).
An Annotated Catalog of Inverted Repeats of Caenorhabditis elegans
Chromosomes III and X, with Observations Concerning Odd/Even Biases and Conserved Motifs, Genome Research, v10(9):1381-1392, Cold Spring Harbor Laboratory Press, September 2000.
